Make Fragments API

The make fragments API generates Rosetta fragment libraries based on an input sequence.

Command Line Interface

Examples

Generate fragment libraries for a sequence

lev engine submit make-fragments \
    --sequence SECVENGGFCPDPEKMGDWCCGRCIRNECRNG

Flags

  • --sequence (str) (Required)
    • Input sequence to generate fragment libraries for

Python Interface

Examples

Generate fragment libraries for a sequence

from engine import EngineClient

client = EngineClient()
client.authorize()

job_id = client.submit_make_fragments(
    sequence="SECVENGGFCPDPEKMGDWCCGRCIRNECRNG"
)

Flags

  • sequence (str) (Required)
    • Input sequence to generate fragment libraries for

Outputs

  • 3mers.tgz
    • library of 3mer fragments
  • 9mers.tgz
    • library of 9mer fragments
  • pssm.tgz
    • PSSM produced during fragment generation
  • sequence-profile.tgz
    • BLAST .chk checkpoint file produced during fragment generation

Updated: